rs27839499 SNP Detail

Summary

• ID
  rs27839499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70294600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTATGT ATCAGAATCC
  CCTTTAAACA GAACACTACA AGAGTCCCTA GTACACACAA CAGGCTTGAA ACAAATTACA
  GGCTGAAGCC CTCCCTCTGC CTCCCTGTCT CCACCCACCA GAACCCCTTC TACTCCTACA
  GATTTTCATC AGTGAGGACA AAGGAACTCC CTTAACAGCA ATACACTTAA CAATACAGGT
  R
  ACTTGATTCT CACAAATACA ATAGAGGACT TACTGTCTAA GTCCATTTAT AGGAAGTTCA
  AAAATAGGCG TTGAGAACAG TGGGTATCTG GGAGGAAAAG AAGGATGTTC AAAGAACATG
  AAGGGAAGGG GCTTTCTGGA AGCTTGGTGA TGTTCCCTGC CTGCTTCAGA CAGGAGCTCC
  ACATGTGTGC TTGCTTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38029628	NES09372856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27839499					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029628	NES09372856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70294600 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1042 bp proximal
Rr593866	regulatory region 593866	1171 bp proximal
Tssr37622	transcription start site region 37622	1754 bp upstream
Tssr37623	transcription start site region 37623	1779 bp upstream
Tssr37624	transcription start site region 37624	1812 bp upstream
Tssr37625	transcription start site region 37625	1856 bp upstream
Tssr42116	transcription start site region 42116	1812 bp downstream
Tssr42117	transcription start site region 42117	1844 bp downstream
Tssr42118	transcription start site region 42118	1856 bp downstream