rs27839497 SNP Detail

Summary

• ID
  rs27839497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70294995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATAAAAA TCCATCATGC
  TGTACCCTTA AGAGTGCGTC ATTTTCTTAC AACTACATTA TGCATTTAAA ACAGTTGAAA
  ACCAAGTAAT TAAATAAAAA CGACAACTCC TTAGGGTCCT CAAAAGCCAG TCAGAGAACA
  AGTTGCTTAG AAAAGCAGCT TCCTCATTTC ACTGCCCAGC CCAGTACCCA CATGTAGGAC
  Y
  CAATGGGCAA GCTCTTGGGG TAACAGGTAC TCACGAGGCT TTGACGAGCA ACTGATCTTT
  CTCCTGGAGC TCGCGCTTCA GACTTTCCAC TTCCACCTTG AGTTCAATGT TCTTGCAGAG
  GCCATAAGGT AAGAAAAGAT ACAGCGTAAG GGGTCGTCAG GGGTAGGAGT AGCAAGCGTT
  GACGGTAGGC AACCTACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38029626	NES09372798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27839497					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029626	NES09372798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70294995 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	647 bp proximal
Rr593866	regulatory region 593866	776 bp proximal
Tssr37622	transcription start site region 37622	1359 bp upstream
Tssr37623	transcription start site region 37623	1384 bp upstream
Tssr37624	transcription start site region 37624	1417 bp upstream
Tssr37625	transcription start site region 37625	1461 bp upstream
Tssr42116	transcription start site region 42116	1417 bp downstream
Tssr42117	transcription start site region 42117	1449 bp downstream
Tssr42118	transcription start site region 42118	1461 bp downstream