rs27839489 SNP Detail

Summary

• ID
  rs27839489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70296249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAAAGG CCTTGAATGC
  AGGATCTGAG GAACATGGCT CCTTCCCAGG AGGAGATAAC AGCAAGTCAG TGGACACTCA
  TTTATTTACT TCAGACACTT GAGTGCTGTT AACAGACCCT AGGACTAAGG ACACTGAAGT
  CAACACGACA GACCCAGGCT CTGCCATCAT GAGAACAAAG CAACTGGCAG TGTAACCCTG
  Y
  GCCTGTCCTT AGACGGCACA GCACAGGGAT AAGAAGCAGA GCGGTGACTG TCAGATTCGA
  CACTGTCAAG AAGGACCAAG GGGATTCCAT GACATGGGGA CAGGAATGTC GAAATTACTG
  AAAAACGTGA AAAATGAGAA ATGCACACTG CAGGACCTGG AATATGGCGA GAAAACTGAA
  CATCACGGAA AATGAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38029618	NES09372809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27839489					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029618	NES09372809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70296249 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	360 bp distal
Rr593866	regulatory region 593866	457 bp distal
Tssr37622	transcription start site region 37622	105 bp upstream
Tssr37623	transcription start site region 37623	130 bp upstream
Tssr37624	transcription start site region 37624	163 bp upstream
Tssr37625	transcription start site region 37625	207 bp upstream
Tssr42116	transcription start site region 42116	163 bp downstream
Tssr42117	transcription start site region 42117	195 bp downstream
Tssr42118	transcription start site region 42118	207 bp downstream