rs27839488 SNP Detail

Summary

• ID
  rs27839488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70297087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGACATAT GTAAAGTTTT ACATAGAACT GCTCTGTACA
  GGCACTAATA ACACTGGTTA GATCCAGGGA CCCAGGGGTC AGAGCAGAGC ATCTTCTCAG
  R
  ACGTGTATGT CAGGGTTTTT ACCATCTGAA CCTGAAGCAG ACACACAAAC ACAATAGCTT
  GATGAGGAAG ATAATTAAAC TACGCCATCC AGTCAGTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38029617	NES09372756	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		A	G	G	A	A
ss45653943	mCV24453515	ABI	CRAMUS_MOUSE	f	SNP		A	G				G	A
ss146495413	ENSMUSSNP1666469	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27839488					SNP	A	A	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029617	NES09372756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70297087 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1198 bp distal
Rr593866	regulatory region 593866	1295 bp distal
Tssr37622	transcription start site region 37622	723 bp downstream
Tssr37623	transcription start site region 37623	691 bp downstream
Tssr37624	transcription start site region 37624	634 bp downstream
Tssr37625	transcription start site region 37625	622 bp downstream
Tssr42116	transcription start site region 42116	656 bp upstream
Tssr42117	transcription start site region 42117	636 bp upstream
Tssr42118	transcription start site region 42118	588 bp upstream