rs27839486 SNP Detail

Summary

• ID
  rs27839486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70297587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTTTCTG CCCTGACAGT ATAGGAAGAA ACTGCCTTCC
  GTGACAAGGG AGATTTATCA GCTCCTGTCG GCTGAAAAGG GCCCTGAAGA ACAGTATGAT
  M
  CCTTTTCAAG AAAACCTATG TAGCAACTCC CATGCCCCAC CACTAAACCT CCAGGAGAGC
  TCCTTTCTTC CCTTCAAAAG TTTCTACCAG TACAAACAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38029615	NES09372758	PERLEGEN	MM_PANEL2	f	SNP		A	C	A	C	C
ss146495420	ENSMUSSNP3408082	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27839486					SNP	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029615	NES09372758	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70297587 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1698 bp distal
Rr593866	regulatory region 593866	1795 bp distal
Tssr37622	transcription start site region 37622	1223 bp downstream
Tssr37623	transcription start site region 37623	1191 bp downstream
Tssr37624	transcription start site region 37624	1134 bp downstream
Tssr37625	transcription start site region 37625	1122 bp downstream
Tssr42116	transcription start site region 42116	1156 bp upstream
Tssr42117	transcription start site region 42117	1136 bp upstream
Tssr42118	transcription start site region 42118	1088 bp upstream