rs27839431 SNP Detail

Summary

• ID
  rs27839431
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70319342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATCTCAG GAGTTGCAGC
  CAAGACCAAT GAGAGCTTAT CTAACCTGTG CCTATGATAC TGTCAGCTCC ATTTCAATAC
  ACAGTATGGC AACACTCTCA TCTTCAATAT ACCAGAAACA AGCCAAATAC CAGGCAGAAC
  CTACCACAAC TTGCATGAAA GATTGGTTGT GGGTGCATGT AAAAGCCTCA CAGATAATGC
  S
  CTCAGCCATC AAGCCCCACA ATATGGCATG CCCCGGACTC TGACATGACT CAAACAGTTC
  TCCAGGAACA CCTCTCCCCC AGGCCTGGCT ACATGGTGAC GTCTTAGAAA GGGATGATGA
  CTTTGCTGTC TTAACTTACG TTTTCAAAGT CCTTCATGTT CCGGGCTCTG GTGGGAGAAA
  CCTTTTCTTC TGACATGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38029558	NES09371522	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27839431					SNP	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029558	NES09371522	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70319342 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			1711 bp distal
Rr593870	regulatory region 593870			772 bp proximal
Rr593871	regulatory region 593871			1197 bp proximal