rs27839428 SNP Detail

Summary

• ID
  rs27839428
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70320761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAACAG ACACCAAGGA
  GTTCAGGAGA GGAACAATGG GAACAGCGAG GACAACTGGG ATAAGCTAAG CCAGAGCCTG
  GTGTTTGCCA GGATGGGAAG AGTGCAGATG GGTGAGAACC TGTTTGTTTC TGTATACTTG
  AGTAGAGGCC AACAGGAGTA AGAATAGTGA ATACATACAT ATAATGCTCA GAGGAGAGAG
  S
  ATGCTAAGTA ACCAGGGAGA GACAAACAAG GTGGTACGCT TTGAGCTGAG GTCTCAACAC
  AGCAGGCAGC TGCAGGCAGA AAAGAGAACA GAAGGCCCTA GGCACATGCC AACTGGGCAG
  AGAGAGTGGG CAGAGCCTTG CCTGCCTGTC TAAGGAGCAC AGGGGTTTGT TTTCTGTCCT
  CAGCCGATGA TCAGCCTCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38029555	NES09371432	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27839428					SNP	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029555	NES09371432	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70320761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593870	regulatory region 593870			within coordinates
Rr593871	regulatory region 593871			201 bp distal