rs27833700 SNP Detail

Summary

• ID
  rs27833700
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59239761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGAACTAT TCACCAATTG
  TTCAGCCCAT CTGACAAAGA CCTAGGCTGG GAGTTCTGTG ACTATGTAAT ATGAGACATT
  GAGCAAGAAG TGATTAAAAG GCCATCTCTC AGGTTACCCT GGTCGTAGAG GCATTTAATA
  CTGTCGAACT TGAAACCCCA GAGCATAATG CACCATCGGG AACTGTCTCC AGCTACTGTC
  W
  CAGGCAGAAG CAAATTCTGT AGTAAGAGGG GCTTTAGAAC TCGCTTGTCT CTGTGACAGT
  AGAGGACAGG AGCCCAGTGC AGGCTTCCTC CTCAGCCCTT GGGTTTGTGA TTCAGAGAGC
  CAGCCTCCCT CAGCCTTTCC ATGACGTACC ATCAACCCAT ACCTGCCAGA TGTTCAGAAA
  GATGACATTT AGTAACAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38011520	NES09410019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27833700					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011520	NES09410019	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59239761 () rs orientation: forward

Symbol	Name	Function Class
Rr593009	regulatory region 593009	within coordinates
Rr593010	regulatory region 593010	446 bp proximal
Rr593011	regulatory region 593011	1540 bp proximal