rs27833692 SNP Detail

Summary

• ID
  rs27833692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59240562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGGGTG ATTCAAAGAT
  CATGATTCCT ACGTCAGCTC CCCTGCTGCT CCCAGGAAAC CTGCTCTGAC AGTGACTCCG
  CGTGAGCAAT CCTGGGGGTG GTTATGCATC CGCAGAGTCA ACATCAGGAC CAAGTCACAT
  CATCATGGTG GTGGGGTAAG ACGGACTCCG GCTCACCTCC TTTCATCTAA AGAGGCAGGC
  Y
  CGGTTAAGTG TCTATTCTTC GGGAGTGTCA TTCTCCTGAG AGGACTGTGA ATTTCTGACG
  ACAGTCCAAG GGATGGAGCA GAGTAATATT CTAATCCTAC AGAGGATCCA CCCTAGATCC
  TAGAGGAGAT CTTCAATCCT AGCATCAAAG CTCAAAGGGT ATGACGGACT TGGTGGGTGA
  GATACCCACC ACTCACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011512	NES09410029	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833692					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011512	NES09410029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59240562 () rs orientation: forward

Symbol	Name	Function Class
Rr593009	regulatory region 593009	637 bp distal
Rr593010	regulatory region 593010	36 bp distal
Rr593011	regulatory region 593011	739 bp proximal
Rr593012	regulatory region 593012	1726 bp proximal