rs27833688 SNP Detail

Summary

• ID
  rs27833688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACTGGCA CCGTACTGCT
  AACAACACTG GGAGAGGGGG AGAATCGTCA GTCCCCCCTC CCACAGTGCT CCAGAAGCAT
  CCAGGAGTCA CGTGTTTCCA AGCACAAACC CTATCCCCAT TTCTGGATGA CTATGAACAA
  TTAATCTCCG AGTCTCCATT TCTTCACCTC TAAGTTAAGG ATAACAATAT GCACTTTGAC
  R
  CATTGTTTTG AACCTTAGCC TCAGCCAGCC ATGTGAAGCA CCTAACTCAA TACTTGGCAC
  AAGCATGAGC CCCCTGAGTG ATTATTGCCA TTCCTGAGAT TAGGGAACTT CCGAGTTGGA
  AGTTCAGGGC GTGGGGTGGA AGGCTGGAAA GATCCCTCAG TGATTAAGAA CACTCGCTGA
  TCTTGCAGAG GTCCTGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011508	NES09410033	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833688					SNP	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011508	NES09410033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241039 () rs orientation: forward

Symbol	Name	Function Class
Rr593009	regulatory region 593009	1114 bp distal
Rr593010	regulatory region 593010	513 bp distal
Rr593011	regulatory region 593011	262 bp proximal
Rr593012	regulatory region 593012	1249 bp proximal