rs27833686 SNP Detail

Summary

• ID
  rs27833686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCACAAG CATGAGCCCC CTGAGTGATT ATTGCCATTC
  CTGAGATTAG GGAACTTCCG AGTTGGAAGT TCAGGGCGTG GGGTGGAAGG CTGGAAAGAT
  Y
  CCTCAGTGAT TAAGAACACT CGCTGATCTT GCAGAGGTCC TGGGTTTCAG TTCCCAACAC
  CCATATGGGG TGACTCACAA CCATCTCTAG CTCTAGTTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011506	NES09410035	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833686					SNP	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011506	NES09410035	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241193 () rs orientation: forward

Symbol	Name	Function Class
Rr593009	regulatory region 593009	1268 bp distal
Rr593010	regulatory region 593010	667 bp distal
Rr593011	regulatory region 593011	108 bp proximal
Rr593012	regulatory region 593012	1095 bp proximal