rs27833682 SNP Detail

Summary

• ID
  rs27833682
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCAAGCT TAAGGAACTT
  CTTTTCAGGA GTCCTGAGAT GCCTCCTGAG ATACATACAG TTCCTGGGAG CTCCTCCCAT
  TCACAGGGGC GCTGCTTTCC GAATGCCAAC TAAACGCTTC TCTGGCTGTT GCTCTCCTCA
  AGGGCCCCCT AAAGTTGGGT ATGGTCATGG CCCTGTCTAG ATGACACAAT ACTTGGTGTC
  S
  ATAGGGTGTT CCTTAAAGTC CTCCTTTCTC CAGAGAAAGC ATTCACAACT TGTTCTAGTT
  GGCCCCACAC AGTAGGTTCT GCATCTGGTC ACTCCCCCCA GACGTTCATC TGTGGGCACT
  TGCACATTGT GCTCTGAGCT TCTTCACCTG TGTCTGTCAC ACTCATGCAG CCAGGCTACA
  CCCTCATCCC TGCGTCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011502	NES09410045	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833682					SNP	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011502	NES09410045	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241707 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	1918 bp downstream
Rr593009	regulatory region 593009	1782 bp distal
Rr593010	regulatory region 593010	1181 bp distal
Rr593011	regulatory region 593011	385 bp distal
Rr593012	regulatory region 593012	581 bp proximal