rs27833681 SNP Detail

Summary

• ID
  rs27833681
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGCCTC CTGAGATACA
  TACAGTTCCT GGGAGCTCCT CCCATTCACA GGGGCGCTGC TTTCCGAATG CCAACTAAAC
  GCTTCTCTGG CTGTTGCTCT CCTCAAGGGC CCCCTAAAGT TGGGTATGGT CATGGCCCTG
  TCTAGATGAC ACAATACTTG GTGTCGATAG GGTGTTCCTT AAAGTCCTCC TTTCTCCAGA
  K
  AAAGCATTCA CAACTTGTTC TAGTTGGCCC CACACAGTAG GTTCTGCATC TGGTCACTCC
  CCCCAGACGT TCATCTGTGG GCACTTGCAC ATTGTGCTCT GAGCTTCTTC ACCTGTGTCT
  GTCACACTCA TGCAGCCAGG CTACACCCTC ATCCCTGCGT CCCTCTATCC TTACAACCTG
  TGCTGGTTTC ATTCCTATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38011501	NES09410047	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27833681					SNP	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011501	NES09410047	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241742 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	1883 bp downstream
Rr593009	regulatory region 593009	1817 bp distal
Rr593010	regulatory region 593010	1216 bp distal
Rr593011	regulatory region 593011	420 bp distal
Rr593012	regulatory region 593012	546 bp proximal