rs27833680 SNP Detail

Summary

• ID
  rs27833680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59241762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTTCCT GGGAGCTCCT
  CCCATTCACA GGGGCGCTGC TTTCCGAATG CCAACTAAAC GCTTCTCTGG CTGTTGCTCT
  CCTCAAGGGC CCCCTAAAGT TGGGTATGGT CATGGCCCTG TCTAGATGAC ACAATACTTG
  GTGTCGATAG GGTGTTCCTT AAAGTCCTCC TTTCTCCAGA GAAAGCATTC ACAACTTGTT
  M
  TAGTTGGCCC CACACAGTAG GTTCTGCATC TGGTCACTCC CCCCAGACGT TCATCTGTGG
  GCACTTGCAC ATTGTGCTCT GAGCTTCTTC ACCTGTGTCT GTCACACTCA TGCAGCCAGG
  CTACACCCTC ATCCCTGCGT CCCTCTATCC TTACAACCTG TGCTGGTTTC ATTCCTATTC
  AGTCCTAGAA CAGGACTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011500	NES09410049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833680					SNP	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011500	NES09410049	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59241762 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	1863 bp downstream
Rr593009	regulatory region 593009	1837 bp distal
Rr593010	regulatory region 593010	1236 bp distal
Rr593011	regulatory region 593011	440 bp distal
Rr593012	regulatory region 593012	526 bp proximal