rs27833673 SNP Detail

Summary

• ID
  rs27833673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59242780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACTGAT AATGTACAGG
  TGATTCATGG GCGATCTCTG CCCCAGCAAA GCTTGTGGAG GTTATTATAG GTTAGTGATG
  CAGTCATACC AAACTCCTTT AAGACAGTAA CCCAGGTTCT GGGTGGGGGG GAACAGCAAG
  TAATGATATA CACGAGGGTC TGAGCCTGGA TCCCCACAGA AAAATCTGGG CCTGATGATT
  Y
  GGATGTGCAC CTATAGCCTT GGTGCTGGGA AGGTAGACAT GTGTGCCCCG TGCTCTTAGT
  GGTCAGCCAG ATCAGCCAGA ATAGGTAGTT TAGAGACCTT GCCTCAAAAT CTCAAACCAA
  ACAGAAGGTG TTTGAGGAGT ACAGCCAAAC TTAATCCTGT GGTTCTGCAC CTGTCTGTAT
  AGCTAAGCAC ACACACTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011493	NES09410063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833673					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011493	NES09410063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59242780 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	845 bp downstream
Rr593011	regulatory region 593011	1458 bp distal
Rr593012	regulatory region 593012	within coordinates
Rr593013	regulatory region 593013	1727 bp proximal