rs27833671 SNP Detail

Summary

• ID
  rs27833671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59243261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATACACA CACACACATA
  CACACACACA CACACACACA CACATACACA CACATACTCT CTCACACACA CACATACTCT
  CTCACACACA CACACACACA CACACACACT CTCTCTCTCT CTCTCTCTCT CACACACATA
  CACACACACA CACCCCTACC TAGCTATCCT GGAACTAGCT GAATAAACTA AGCTAGTGGA
  R
  GATGGCCTGG AATTTGCCGA GAACCACCTT CATCTGCATG CTGCCTGTTG GCGTGCTTGG
  CCTCTTTATT CAGTTTTGAA GTTTGATTTT AACCAGGGTT GATCCTTCTC TTTTGGACAC
  AAAAATCTTT CTACTTGATA AAAAAAAAAT ACAAGAAAAT AAAGATAATC ATCTTTTTGC
  CTTGTTACAT TGAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011490	NES09410066	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833671					SNP	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011490	NES09410066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59243261 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	364 bp downstream
Rr593011	regulatory region 593011	1939 bp distal
Rr593012	regulatory region 593012	256 bp distal
Rr593013	regulatory region 593013	1246 bp proximal
Rr593014	regulatory region 593014	1644 bp proximal