rs27833614 SNP Detail

Summary

• ID
  rs27833614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59259543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCACTCT TTAGTGAGTA
  GCTATGAAAT GGAAGAGAGG CCATGTGCTG GCCTTTTGGG AGAGGACGTC GGGAAGACTT
  CCTTCAGTCA GCCTCTGTAT AGGAAGGTTT CCCAGGACAC AGTGTTGCTT GTCATGGGTT
  GCTGAAGGGT AGGGGAAGAC AAAGGTGACA GCAGCATTGT CAGTGCAAGG CCTGCTAGCT
  Y
  CCCAGGTGAC AGGCCTGCCT CTGACTGGGA ACTGACTCTA GAGCAAGCCA GGAGCTGTGT
  CCTCATCTGA GACTTTCAAA ATGCAGCCAC AAAGGCTGCA GACTAGGGGT AGTATAAAAC
  CGACAGATAC CAACCTCATT GAGGGATCTT CCTCCACTAT CTCCCCATTG AGTTTCTCCT
  GTCTCTTTTC TCTGCAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011433	NES09409624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833614					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011433	NES09409624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59259543 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	508 bp upstream
Gm68876	predicted gene, 68876	within coordinates
Gm68878	predicted gene, 68878	959 bp downstream
Rr367634	regulatory region 367634	1851 bp upstream
Rr398285	regulatory region 398285	1412 bp upstream
Rr593020	regulatory region 593020	373 bp proximal
Rr593021	regulatory region 593021	450 bp proximal
Rr593022	regulatory region 593022	1485 bp proximal
Tssr37421	transcription start site region 37421	493 bp upstream