rs27833610 SNP Detail

Summary

• ID
  rs27833610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59259946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGCCAG GCCTCAGATC
  TCCAAAGAGA CAAAGTAGCT GTCCTTCCCT CGGGGGCAGC CACAACTCTG CCAGCACCCA
  GCCTATTTGT CCCATGAAGA TGAGTTACAA GCCCCACTGG GGGCTGTGGG TCTCAGGTTC
  CAAGTGCTGC AAAGTGAATG GCTACTTCTC TTCTGTCCAT GTGACTGTCT TCCAACAAAA
  Y
  TCAATTCTAG TCAGATGTGA AATGATCAGG CGATCTGCCC AAGTCCCCAG CCAATAGGTG
  GCAGAGCTGT AGTTAGAAGC CAGGAAGTGA AACCCCATTT CCCTAGATTC TGATAAAGAC
  ACAGGGAGGG AGAAGGTACC TGCATATGTT TCCTCTTTTT TTCTTTTCTT CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011429	NES09409628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833610					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011429	NES09409628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59259946 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	105 bp upstream
Gm68876	predicted gene, 68876	27 bp upstream
Gm68878	predicted gene, 68878	556 bp downstream
Rr367634	regulatory region 367634	1448 bp upstream
Rr398285	regulatory region 398285	1009 bp upstream
Rr593020	regulatory region 593020	within coordinates
Rr593021	regulatory region 593021	47 bp proximal
Rr593022	regulatory region 593022	1082 bp proximal
Tssr37421	transcription start site region 37421	90 bp upstream