rs27833609 SNP Detail

Summary

• ID
  rs27833609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59260487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAACTC AGAAATCCAC
  CTGCCTCTGC CTCCCAAATG CTGGGATTAA AGGCGTGTGC CTCCACTGCC CGGCTTCTGC
  ACGAGTTTCT TTTGGAACTT TTGAGCAAAG CCTCTCTAGG GAAGGGAAAC TGATTTCTGG
  GTAGAGCTAA TGTGGCTGTC TGTTGTTGGT TTGTTTGTTT GTTTGTTTAA CACGATGAAA
  W
  TTTAAACTTA GGTGTTTTGG GTTGTTGTAG TAGGTTTTTT GTTTGTTTGT TTGTTTATCT
  TTTCAAACCC TGAGGCTTAA ATTCTTTTTC TTCTTAGTCG AACCGAAGAC TTTGTTTTTT
  TGTCCATTTG TTCTTCAGCC TTCCAAAGAG AAAGCTCTCG GTGAGACTGC CTCCAGATGT
  CCTCACGTAC ACTTGGGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011428	NES09409491	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27833609					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011428	NES09409491	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59260487 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	568 bp upstream
Gm68878	predicted gene, 68878	15 bp downstream
Rr367634	regulatory region 367634	907 bp upstream
Rr398285	regulatory region 398285	468 bp upstream
Rr593020	regulatory region 593020	426 bp distal
Rr593021	regulatory region 593021	473 bp distal
Rr593022	regulatory region 593022	541 bp proximal
Rr593023	regulatory region 593023	1735 bp proximal
Tssr37421	transcription start site region 37421	434 bp downstream