rs27833606 SNP Detail

Summary

• ID
  rs27833606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59261098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGTGT GGCAGCAGGC
  AGCTGGGGCA GGAAGCTGGG GAGGCGGGAG GGCGCACATC CTCAACTGCA AACAAACAAA
  CAAACAAAAA GCAAATCGAG CAAAACCCTC AAAGCCCACC CCAGCGACTC ACTTCCTCTA
  GCAAGGTCCC ACTTCTTAAA GGTTCCGGAA CACCTGGGCC TACGGAGGAT ATTTCCCCTG
  Y
  CAAACGCTTA CACATAGGGT TTGAGTCCAT CTGAGTGCAG GAAGGGGGAG TGGAAGGAAC
  TTTCCAGCAG GCTAACTCAC AATTCTAGTT CCTCATAAAG GGGGCTCCCT CCCCAGGTTA
  ACACAAAGAG GAAACAGAGC TCCTCACCCC AATGGAGGTG AGAGGCTGAG GACCACTTGG
  GACTTCCTGT GTGTACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38011425	NES09409497	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27833606					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011425	NES09409497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59261098 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	1179 bp upstream
Gm68878	predicted gene, 68878	within coordinates
Rr367634	regulatory region 367634	296 bp upstream
Rr398285	regulatory region 398285	within coordinates
Rr593020	regulatory region 593020	1037 bp distal
Rr593021	regulatory region 593021	1084 bp distal
Rr593022	regulatory region 593022	within coordinates
Rr593023	regulatory region 593023	1124 bp proximal
Tssr37421	transcription start site region 37421	1045 bp downstream
Tssr37422	transcription start site region 37422	1892 bp upstream