rs27833603 SNP Detail

Summary

• ID
  rs27833603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59261385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCTCAT AAAGGGGGCT
  CCCTCCCCAG GTTAACACAA AGAGGAAACA GAGCTCCTCA CCCCAATGGA GGTGAGAGGC
  TGAGGACCAC TTGGGACTTC CTGTGTGTAC AGCATCGTTG GCCACTGTGA ATCAACAATG
  ACCAGAAGCT TCCAACGAGA ACCACAGAAA ATTATGTGTG CAATGCTTGA TCAGCAATGG
  Y
  GCCAAAGAGA TGATGACACA CGCGAAACCG CAGTAACAAA TTATCACACA GGAAGAAGCC
  TGAGAGCAAG GCACCTGTGT TGAGGCTGCT CCTGCCCAGT TCCCTGTGGG CTCACACACC
  ACAGTACCTA GCAGATCTTA AAGGTTTCCT CCTGCTTTTA GTAAGCATCT ACTTTAGATA
  TAAGAATAAT GGTTTTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38011422	NES09409505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27833603					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011422	NES09409505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59261385 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	1466 bp upstream
Gm68878	predicted gene, 68878	within coordinates
Rr367634	regulatory region 367634	9 bp upstream
Rr398285	regulatory region 398285	130 bp downstream
Rr593020	regulatory region 593020	1324 bp distal
Rr593021	regulatory region 593021	1371 bp distal
Rr593022	regulatory region 593022	within coordinates
Rr593023	regulatory region 593023	837 bp proximal
Tssr37421	transcription start site region 37421	1332 bp downstream
Tssr37422	transcription start site region 37422	1605 bp upstream