rs27831391 SNP Detail

Summary

• ID
  rs27831391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43478263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGTTAG CACTGAGAGG
  ATAGGGAGGG ATAAAGAGAA CACATAGAAC ACAGGCTTCA GAGATTGAAA GAAAAATAAA
  ATTCAGAACA CACGCCATTG GGGCTACACA TAAAACAACA ACAACCAACC AACCAACCAA
  CCAACCAAAC AAACAAACAG GAACTCAGTT ATAAGCGATG TTTGCCCAAC TCCAATAAGG
  Y
  CCTGGGCTGG AGTCATGGGC AACGCCAAAC CAGGGGACTA CAATTCCCAG GATGCTATGG
  GCCAGGCCTC ATCACGCCTG CGCAGAGGTG ATGGCGCTGC CTCTTTACGT CTGGAGGGGG
  CACTGGAGCT TACTTAGTTC TGAAGGCTTT GAGTTCGTGC TGAGACCAGT CTGGGGTTCT
  AAATCAGCTT CCTGAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005612	NES09448016	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831391					SNP	T	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005612	NES09448016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43478263 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	within coordinates
Rr398231	regulatory region 398231	within coordinates
Rr590993	regulatory region 590993	1163 bp distal
Rr590994	regulatory region 590994	1457 bp distal
Rr590995	regulatory region 590995	1177 bp distal
Rr590996	regulatory region 590996	within coordinates
Rr590997	regulatory region 590997	106 bp proximal
Rr590998	regulatory region 590998	515 bp proximal
Rr590999	regulatory region 590999	741 bp proximal
Rr591000	regulatory region 591000	793 bp proximal
Rr591001	regulatory region 591001	1404 bp proximal
Rr591002	regulatory region 591002	1940 bp proximal
Tssr41421	transcription start site region 41421	502 bp downstream