rs27831390 SNP Detail

Summary

• ID
  rs27831390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43478354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCATTGG GGCTACACAT
  AAAACAACAA CAACCAACCA ACCAACCAAC CAACCAAACA AACAAACAGG AACTCAGTTA
  TAAGCGATGT TTGCCCAACT CCAATAAGGC CCTGGGCTGG AGTCATGGGC AACGCCAAAC
  CAGGGGACTA CAATTCCCAG GATGCTATGG GCCAGGCCTC ATCACGCCTG CGCAGAGGTG
  R
  TGGCGCTGCC TCTTTACGTC TGGAGGGGGC ACTGGAGCTT ACTTAGTTCT GAAGGCTTTG
  AGTTCGTGCT GAGACCAGTC TGGGGTTCTA AATCAGCTTC CTGAGCCTTA GAGCATTCAG
  CCCTGGTTCC TGCTAGTGCC AGTGTGCTAT TCCGATCAGC TCCTCTTCGA AGCCTAAACT
  CTCTCACGTC CTTCGGGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005611	NES09448017	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831390					SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005611	NES09448017	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43478354 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	within coordinates
Rr398231	regulatory region 398231	within coordinates
Rr590993	regulatory region 590993	1254 bp distal
Rr590994	regulatory region 590994	1548 bp distal
Rr590995	regulatory region 590995	1268 bp distal
Rr590996	regulatory region 590996	within coordinates
Rr590997	regulatory region 590997	15 bp proximal
Rr590998	regulatory region 590998	424 bp proximal
Rr590999	regulatory region 590999	650 bp proximal
Rr591000	regulatory region 591000	702 bp proximal
Rr591001	regulatory region 591001	1313 bp proximal
Rr591002	regulatory region 591002	1849 bp proximal
Tssr41421	transcription start site region 41421	411 bp downstream