rs27831387 SNP Detail

Summary

• ID
  rs27831387
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43478507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGGAT GCTATGGGCC
  AGGCCTCATC ACGCCTGCGC AGAGGTGATG GCGCTGCCTC TTTACGTCTG GAGGGGGCAC
  TGGAGCTTAC TTAGTTCTGA AGGCTTTGAG TTCGTGCTGA GACCAGTCTG GGGTTCTAAA
  TCAGCTTCCT GAGCCTTAGA GCATTCAGCC CTGGTTCCTG CTAGTGCCAG TGTGCTATTC
  M
  GATCAGCTCC TCTTCGAAGC CTAAACTCTC TCACGTCCTT CGGGTGCGGA CTCTGAACCA
  GTTTCAGAAG CACAGCCCCA CTCAAAAGCC CACATCCCGA TGCTGTGGTT CCCTCCTTCC
  GGTGTCTGCC CCCAAACCAT CCTTCCTCCC TCCCACACAA TTGCCTGACC TTGATTGCGA
  CCTAGGTGTC CCTTAGAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005608	NES09448022	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	A	C	C	C	C	C	C	A	C	A
ss146240231	ENSMUSSNP705126	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831387					SNP	C	A	C	A	C	A	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005608	NES09448022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43478507 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	within coordinates
Rr398231	regulatory region 398231	within coordinates
Rr590993	regulatory region 590993	1407 bp distal
Rr590994	regulatory region 590994	1701 bp distal
Rr590995	regulatory region 590995	1421 bp distal
Rr590996	regulatory region 590996	within coordinates
Rr590997	regulatory region 590997	117 bp distal
Rr590998	regulatory region 590998	271 bp proximal
Rr590999	regulatory region 590999	497 bp proximal
Rr591000	regulatory region 591000	549 bp proximal
Rr591001	regulatory region 591001	1160 bp proximal
Rr591002	regulatory region 591002	1696 bp proximal
Tssr41421	transcription start site region 41421	258 bp downstream