rs27831381 SNP Detail

Summary

• ID
  rs27831381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43479477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTGGGC TATATTCTGT
  GATGGGACCA CAAAGATGGG TGTATAGTGG ATGCCACTTT GTTTTAAAAC CGAAATATTT
  CTAATCCATC ACCTTGTCCC CATGCCTACT GAGACATTGT TCGATGTTTC TGACATCTTT
  GTAAGGGCCC TTCCGAGCTC CATCCTACAG GCCTCCAGCC CACACGGCGA CCACTGGAGC
  K
  TATTCCTTGC TTCACTCCGT TTTTCACTCT TTTCCACCTC GCCAGAAGCA GGAAATCCAA
  GCTCCTTGGC ACGACTGGCT TCTGTCAGGC CACCGGACTC ATCTTGCTCC TTTCCTTTCT
  ATCGCCTTTA TCGCGGGGGT GGGGGGTAGG GGGGCAGCAA CTCTATAGAA GCCTCCTCTC
  CTTTGCCTTG TGGTGCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005602	NES09447965	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T	T	T	T	T	T	T	G	T
ss146240252	ENSMUSSNP2138307	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831381					SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005602	NES09447965	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43479477 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	661 bp upstream
Rr398231	regulatory region 398231	928 bp downstream
Rr590996	regulatory region 590996	700 bp distal
Rr590997	regulatory region 590997	1087 bp distal
Rr590998	regulatory region 590998	571 bp distal
Rr590999	regulatory region 590999	within coordinates
Rr591000	regulatory region 591000	400 bp distal
Rr591001	regulatory region 591001	190 bp proximal
Rr591002	regulatory region 591002	726 bp proximal
Rr591003	regulatory region 591003	1445 bp proximal
Tssr41421	transcription start site region 41421	666 bp upstream