rs27831380 SNP Detail

Summary

• ID
  rs27831380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43479834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGGACTC CATGTTTTCC TCATTTTAAT AATCCCTAGC
  GTTATTGAAC ACTCTGTCTT AGTGATTTAC ATATGGTAAT TAACTTAAAC CACAAAACGA
  R
  ATTTCTTTTT CTTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTTTT TTTTTTCTCG
  AGACAGGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005601	NES09447966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831380					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005601	NES09447966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43479834 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	1018 bp upstream
Rr398231	regulatory region 398231	1285 bp downstream
Rr590996	regulatory region 590996	1057 bp distal
Rr590997	regulatory region 590997	1444 bp distal
Rr590998	regulatory region 590998	928 bp distal
Rr590999	regulatory region 590999	within coordinates
Rr591000	regulatory region 591000	757 bp distal
Rr591001	regulatory region 591001	146 bp distal
Rr591002	regulatory region 591002	369 bp proximal
Rr591003	regulatory region 591003	1088 bp proximal
Tssr41421	transcription start site region 41421	1023 bp upstream