rs27831378 SNP Detail

Summary

• ID
  rs27831378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43480958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGTAAA GGCATTTGCA
  GACCCTTCTG AAAACCTGAG CTTAATACCC ATACAGTAAA AGGAAAGAGC CAACTCCTGC
  CCCCTCCCCA TCACCTTCCC CACAAACACC ATTACTACTA ATAACGTGAT TTTTAAACAT
  TTAAAATCCA AGAAGGTAGA CAGTGCCTGA CAAGGAATGT CCAGGGTTAG CCTCCAGGTT
  Y
  CACATGTATG CACACACACG TGACATCTTA CCCTTCCTCA TAAGCACGTA CACACACACA
  CACACACACA CACACACACA CACACACACA CTAATGAATG AGAAGAATAT TTTCCCAATC
  ACACAGACTC AGAAACTGAG GCCTGCTTAC TAAGGACCAC TCAGGCCGGC AATGAGTGGA
  AGGTGTAGAC TTTGAACTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005599	NES09447926	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831378					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005599	NES09447926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43480958 () rs orientation: forward

Symbol	Name	Function Class
Rr367607	regulatory region 367607	1234 bp upstream
Rr590999	regulatory region 590999	1116 bp distal
Rr591000	regulatory region 591000	1881 bp distal
Rr591001	regulatory region 591001	1270 bp distal
Rr591002	regulatory region 591002	734 bp distal
Rr591003	regulatory region 591003	within coordinates
Sit1	suppression inducing transmembrane adaptor 1	1125 bp downstream
Tssr36968	transcription start site region 36968	1313 bp upstream