rs27831374 SNP Detail

Summary

• ID
  rs27831374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43481762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAAAG AGAAGGAGAA
  AGAGAAGGAG AAGGAGAAGG AGAAGGAGAA GGAGAAGGAG AAGGAGAAGG AGAAGGAGAA
  GGAGAAGGAG GAGAAGGAGA AGAAGGAGAA AGAAGAAGCT GGAATGGACC ACTATGGGCA
  GAACTCATGG GATGTGGGGG TATGGTTGTG TGTGGAAGCT GATGGAGGAG CTAGGCCAGA
  W
  GGTAGGGGCA CAGATACACA AGTAATGAAT AGAGTAGTTG AGGACTGGTG AGTTTTCGAC
  CCCAGTAGCA ACGGGGTGGC TCTAAGCATG AGCATGAGTC CTGTGAATGT TCTAGAATCA
  GGAATAACAC CTAGGTAGCA GGGCTCCAGT CCTTCATCCT CAGTATCTAC CTCTTCAATC
  TTTCCCCAGC TAGGCGCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005595	NES09447851	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	T	T	T	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831374					SNP	A	A	T	A	T	A	T	T	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005595	NES09447851	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43481762 () rs orientation: forward

Symbol	Name	Function Class
Rr367607	regulatory region 367607	430 bp upstream
Rr590999	regulatory region 590999	1920 bp distal
Rr591002	regulatory region 591002	1538 bp distal
Rr591003	regulatory region 591003	389 bp distal
Rr591004	regulatory region 591004	1962 bp proximal
Sit1	suppression inducing transmembrane adaptor 1	321 bp downstream
Tssr36968	transcription start site region 36968	509 bp upstream
Tssr41422	transcription start site region 41422	1826 bp downstream
Tssr41423	transcription start site region 41423	1934 bp downstream