rs27831373 SNP Detail

Summary

• ID
  rs27831373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43481902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATC AGGAATAACA CCTAGGTAGC
  R
  GGGCTCCAGT CCTTCATCCT CAGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38005594	NES09447852	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G	G	G	G		G	G	A	A		A
ss45640010	mCV23402388	ABI	CRAMUS_MOUSE	f	SNP						A		G
ss146240271	ENSMUSSNP4320224	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss321098284	CHEV_4_43494774	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27831373					SNP	A	A	A	A	A	A	G	G	G	G	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005594	NES09447852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43481902 () rs orientation: forward

Symbol	Name	Function Class
Rr367607	regulatory region 367607	290 bp upstream
Rr591002	regulatory region 591002	1678 bp distal
Rr591003	regulatory region 591003	529 bp distal
Rr591004	regulatory region 591004	1822 bp proximal
Sit1	suppression inducing transmembrane adaptor 1	181 bp downstream
Tssr36968	transcription start site region 36968	369 bp upstream
Tssr41422	transcription start site region 41422	1686 bp downstream
Tssr41423	transcription start site region 41423	1794 bp downstream