rs27831221 SNP Detail

Summary

• ID
  rs27831221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCAAGC ACAAGCGCAA
  GCTGGTCAAT TAGCTCTCAG CCCCATTCAC TCCTTTGTTC ATTCACTCAG CACCAGCAGG
  GAACCAGGAA GCAGACTAAC ACAAGGCTTC CTTTAGGAGG AAGGCTGTCT TGACAGTCAT
  AAGTGACGAA CACGGAAAAA ATAATGGCCA CAGAGGAGGC GAAACTTAAA TCTTTCACTG
  R
  TGGGAAACAA GGAGGAATAC TGCACAGAGA GAGGTCAGCG TGAGCAAGGC TGGAGTATGG
  ACCAGTTAGG GAGTGCCACA GCAACAAGCT ATGCCCTGGG AAGAGCCATT TCTCTGCTGC
  TTCTGTGGCC CCTCACTTCC CCTTCATGAA GTGCAGTATT CAGTGACCTC TTTGTACCTG
  TAATAATCAA GAACGTACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38005442	NES09446709	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27831221					SNP	G	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005442	NES09446709	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509467 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			593 bp distal
Gm12454	predicted gene 12454			683 bp upstream
Rr591016	regulatory region 591016			193 bp distal
Rr591017	regulatory region 591017			1568 bp proximal
Tssr36975	transcription start site region 36975			568 bp downstream
Tssr41426	transcription start site region 41426			733 bp upstream
Tssr41427	transcription start site region 41427			714 bp upstream