rs27831219 SNP Detail

Summary

• ID
  rs27831219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGGGA AACAAGGAGG
  AATACTGCAC AGAGAGAGGT CAGCGTGAGC AAGGCTGGAG TATGGACCAG TTAGGGAGTG
  CCACAGCAAC AAGCTATGCC CTGGGAAGAG CCATTTCTCT GCTGCTTCTG TGGCCCCTCA
  CTTCCCCTTC ATGAAGTGCA GTATTCAGTG ACCTCTTTGT ACCTGTAATA ATCAAGAACG
  Y
  ACACTCCAAG GTGGGAGGAA GCCAGGAAGT GAGGACGCCT ATGAGACTTA CCAGTGTGAC
  ATTCACAGCA CAAAGTTCAG GGAAGTTCCT CAGGAGCAGG CGGGCAGGCG TGAGTTATTA
  AAGTGAACGC AAAGGCAGTA CAAGTATAAC ATACATGATG GTCTTCTTCA GGAAACCACG
  GCGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005440	NES09446711	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	T	T	T	T	C
ss45693299	mCV24974111	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss146240446	ENSMUSSNP6694975	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831219					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005440	NES09446711	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			789 bp distal
Gm12454	predicted gene 12454			879 bp upstream
Rr591016	regulatory region 591016			389 bp distal
Rr591017	regulatory region 591017			1372 bp proximal
Tssr36975	transcription start site region 36975			764 bp downstream
Tssr41426	transcription start site region 41426			929 bp upstream
Tssr41427	transcription start site region 41427			910 bp upstream