rs27831218 SNP Detail

Summary

• ID
  rs27831218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTGGA GTATGGACCA
  GTTAGGGAGT GCCACAGCAA CAAGCTATGC CCTGGGAAGA GCCATTTCTC TGCTGCTTCT
  GTGGCCCCTC ACTTCCCCTT CATGAAGTGC AGTATTCAGT GACCTCTTTG TACCTGTAAT
  AATCAAGAAC GTACACTCCA AGGTGGGAGG AAGCCAGGAA GTGAGGACGC CTATGAGACT
  Y
  ACCAGTGTGA CATTCACAGC ACAAAGTTCA GGGAAGTTCC TCAGGAGCAG GCGGGCAGGC
  GTGAGTTATT AAAGTGAACG CAAAGGCAGT ACAAGTATAA CATACATGAT GGTCTTCTTC
  AGGAAACCAC GGCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005439	NES09446712	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	C	T	T	C	C
ss45576115	mCV24974101	ABI	CRAMUS_MOUSE	f	SNP	C		T					T		T
ss146240450	ENSMUSSNP5599659	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27831218					SNP	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005439	NES09446712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509712 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			838 bp distal
Gm12454	predicted gene 12454			928 bp upstream
Rr591016	regulatory region 591016			438 bp distal
Rr591017	regulatory region 591017			1323 bp proximal
Tssr36975	transcription start site region 36975			813 bp downstream
Tssr41426	transcription start site region 41426			978 bp upstream
Tssr41427	transcription start site region 41427			959 bp upstream