rs27829303 SNP Detail

Summary

• ID
  rs27829303
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59782236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATCACT AATCTTGACA
  GGTTAAAGTA AAGAATTAGT AATGTTAAAA AATATGTTGC TAATACAGTG CTAAACTGAT
  TTTAAATTGG GAGATTCCAC TTTGCTATTC ATAATTCTGG ATGCAGTAAC TGCTCTATAC
  TAAATTTTCT CTACCTCAAA TATATTTACT GTATGGGAGA ACGTTCCTAG TAATAACAGA
  W
  GTCCCAGCAT GCATTACCTT GTCCTGAAGG ATTTGCTGCC ATCTTCCTAT TCTGGGTCAA
  TTATATTCAG TGGCCACTGA TCAGGACTTT ACAATCATCT GTAAAAAAAT TTTTGTGCAC
  ACATAAAATG CACTGGCCTT AAATTACAGA CTCAAAAAAG AACAGCTAGG CTGAGTTTGG
  TTTCTTAGTC TCTTAAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009629	NES09389776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829303					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009629	NES09389776	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59782236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14350	CpG island 14350			1045 bp proximal
Inip	INTS3 and NABP interacting protein			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr376571	regulatory region 376571			1212 bp downstream
Rr398295	regulatory region 398295			1546 bp upstream
Rr593133	regulatory region 593133			1362 bp distal
Rr593134	regulatory region 593134			1466 bp distal
Rr593135	regulatory region 593135			579 bp proximal
Rr593136	regulatory region 593136			1562 bp proximal
Rr593137	regulatory region 593137			1779 bp proximal
Tssr41949	transcription start site region 41949			861 bp upstream
Tssr41950	transcription start site region 41950			1564 bp downstream