rs27829301 SNP Detail

Summary

• ID
  rs27829301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59783656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGCTCTA AGCAGATGCC
  GGGTGGAAAG GACTCGCGTC TCCCACGGCT GGGGCTGGAG CACGGCATGG GCGAAGCCGA
  GCTCGTACCG AAGGCTATCA AGGCCACCCT GAGAAAGGGT CAGGGTGACC CAGGAGTCCC
  CGCCCGCGCG CGGGGTGGGC GAAACCCAAC GGGAAGTGAG AAACCCTCGC ACACTATGCC
  R
  CGCGAGGCCG CTGCCCCGTG GCCAGCGTTC GGGCCACCCT TCTCTTGGCG TCACCAGTCC
  TTTTTACTTA CCCGGAATGC GAGGAGCCTG GAGAAAGCTC GCTGTCCGGT CGCAGCCGTG
  CAGGGGGGCG CGCCCACGCA GAACCCGGCG AGAGTGCAGC AATGCACCGC GCTACAACCT
  TCCCGCCGGC ACCAACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009627	NES09389711	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829301					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009627	NES09389711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59783656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14350	CpG island 14350			within coordinates
Inip	INTS3 and NABP interacting protein			Intron
				Noncoding-Transcript-Variant
Rr376572	regulatory region 376572			1329 bp upstream
Rr398295	regulatory region 398295			126 bp upstream
Rr593135	regulatory region 593135			within coordinates
Rr593136	regulatory region 593136			142 bp proximal
Rr593137	regulatory region 593137			359 bp proximal
Tssr41950	transcription start site region 41950			144 bp downstream