rs27829300 SNP Detail

Summary

• ID
  rs27829300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGGTCC CTAGCACCTA
  AATTGATTCT TTTTTTTTCC CCTTCAGGTT TGCAGGAGAT TAGCTGTCTG TCTGTCTGTC
  TGTCTGTCTG TCTGTCTGTC TGTCTGTCAG GATTTATTTA ACCCTGATGT TAATCCACTT
  CAGTAGAGCT TCAGAGGGAG GTTGAGCACA CTTTCAGGTT TTAACAACCA TCCCAGGAAT
  R
  TTTTTGTTGT TTACCGTCTG AGTCAATAAT TATACACAAG GTGAGCACTA AATAGGTACA
  AGTTTTCACT AGTGTGCATA ATCTGAATTT TAAAAATGAA AGTGTCGGCT GAGAGCAGTG
  AGGCATGCTT TTGATCCCAG CACTCTTGGA GGCAGAGACG GATCTCGGAT CTCTCGAAGT
  TTGAGGCCAT CCAGGTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009626	NES09389714	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829300					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009626	NES09389714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	151 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	726 bp upstream
Rr398295	regulatory region 398295	176 bp downstream
Rr593135	regulatory region 593135	462 bp distal
Rr593136	regulatory region 593136	within coordinates
Rr593137	regulatory region 593137	223 bp distal
Tssr41950	transcription start site region 41950	383 bp upstream