rs27829299 SNP Detail

Summary

• ID
  rs27829299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59784532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATAAT CTGAATTTTA
  AAAATGAAAG TGTCGGCTGA GAGCAGTGAG GCATGCTTTT GATCCCAGCA CTCTTGGAGG
  CAGAGACGGA TCTCGGATCT CTCGAAGTTT GAGGCCATCC AGGTCTGCAT AGCAAACTCC
  AGGACAGTCA GGATTACACA GAGAAACCCC CGACTCAAAA GCAAACAAAC AAAAGAGTGA
  M
  CGCCACACCA AGATGCTACT GGAAGTTACC CTATGCTGCA TAGCCTCACG CTAAATCCAG
  ACGTTTACCT TAAGACGTAA AAGCGTTTGC CAGGCGGTGG TGGCGTGGGG GGGGGGGGGG
  GGGGGCAGAG CCAGGCATAG CTCTATGAAT TCAAGGCCAA CCTTCAAAGC GAGTTCCAGG
  ACAGCCAGGG CTACCCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009625	NES09389658	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829299					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009625	NES09389658	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59784532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	424 bp distal
Inip	INTS3 and NABP interacting protein	Intron
Rr376572	regulatory region 376572	453 bp upstream
Rr398295	regulatory region 398295	449 bp downstream
Rr593135	regulatory region 593135	735 bp distal
Rr593136	regulatory region 593136	176 bp distal
Rr593137	regulatory region 593137	496 bp distal
Rr593138	regulatory region 593138	1931 bp proximal
Tssr41950	transcription start site region 41950	656 bp upstream