rs27829298 SNP Detail

Summary

• ID
  rs27829298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59786010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTTCA GTTAAAAGGT
  CCTGGTGAGG CCGAGGCTGA CTTAAAAAAT AAATAAGATC TCTATTCTTA GGAGAATTTT
  TTTTTTCCTG TTGCGCAAGT AGTCAGTGCA AGAACCAGGG CACAGGAATC TCTTTAATTC
  CCAAACGGGG GAAATAAAAG GGTTAACAGC TGAAAATGTT TACTCCCCTG ATCATGACCT
  S
  GTGAATACAT ACATCTTACT ATTATAACTG CCTACACAGT AGTTAAAATA ATAACACATT
  AAAATAGTGG GCATTCTAAA AGAACATTGT TTAAGGAGTG GAAGAAAGTT CCTCTAAAAC
  AATTCGTAGT TCCCTGACCA GTTCAGTATG ACTAAAAAGG GGGAACATGA TCAGCAGAAA
  GATAAATTTT ACTCATGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38009624	NES09389572	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C		G	C	C	G		C
ss321141383	CHEV_4_59798882	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829298					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009624	NES09389572	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59786010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	1902 bp distal
Rr376572	regulatory region 376572	within coordinates
Rr398295	regulatory region 398295	1927 bp downstream
Rr593136	regulatory region 593136	1654 bp distal
Rr593137	regulatory region 593137	1974 bp distal
Rr593138	regulatory region 593138	453 bp proximal
Rr593139	regulatory region 593139	825 bp proximal