rs27829297 SNP Detail

Summary

• ID
  rs27829297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59786097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGCGCA AGTAGTCAGT
  GCAAGAACCA GGGCACAGGA ATCTCTTTAA TTCCCAAACG GGGGAAATAA AAGGGTTAAC
  AGCTGAAAAT GTTTACTCCC CTGATCATGA CCTCGTGAAT ACATACATCT TACTATTATA
  ACTGCCTACA CAGTAGTTAA AATAATAACA CATTAAAATA GTGGGCATTC TAAAAGAACA
  Y
  TGTTTAAGGA GTGGAAGAAA GTTCCTCTAA AACAATTCGT AGTTCCCTGA CCAGTTCAGT
  ATGACTAAAA AGGGGGAACA TGATCAGCAG AAAGATAAAT TTTACTCATG GCCAATTGTT
  TTGCCTTTGA TTTTTGTGAC TAGTAACCCT TGAAATCATT TTGTTTTCTC CTTGAGAGTT
  CTTGGAACTT CTATAGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009623	NES09389573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829297					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009623	NES09389573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59786097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14350	CpG island 14350	1989 bp distal
Rr376572	regulatory region 376572	within coordinates
Rr593136	regulatory region 593136	1741 bp distal
Rr593138	regulatory region 593138	366 bp proximal
Rr593139	regulatory region 593139	738 bp proximal