rs27829265 SNP Detail

Summary

• ID
  rs27829265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59807396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATGAGT GGAATTGGGA
  GACTTAACTT TACTTCTTCT CTTAGATGGG AAAGGCATGT GGGAGGTAAC ATTTCCTATG
  GGAGAGTGTG ACTTGCTGGG CCTAAGCTCT CAGAATGACC GGGAAGTGAT AGGGATTTAT
  AAAGCCTAAA CTAATGAAAT GGATACATTG AACAGCTCAA AATATGTTCT TGCGTTCACA
  Y
  TGGTACCTCT GTGGTCATTG CTTTTTATAG ATTTTAAGAT TATGTGAAAA CATAGGCAGC
  TTGCAAACCC TCCCTTATGT TTGACATTCA AAGAGTGATC ATTGAATGCC TGAATGATAA
  TTTTTTTCTT ATTATTAGCA GAGACATTGA TTTTGAATGG ATGTAGAATG GGAACTAAGG
  TTAATTCTCA GTTCTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009591	NES09388624	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829265					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009591	NES09388624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59807396 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14351	CpG island 14351			815 bp distal
Rr593143	regulatory region 593143			1546 bp distal
Rr593144	regulatory region 593144			1093 bp proximal
Rr593145	regulatory region 593145			1175 bp proximal
Snx30	sorting nexin family member 30			Intron
				Noncoding-Transcript-Variant
Tssr37447	transcription start site region 37447			1482 bp downstream
Tssr37448	transcription start site region 37448			557 bp downstream