rs27829262 SNP Detail

Summary

• ID
  rs27829262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59808447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCCTGA TTATGTATGG
  TCTCCTTCAC AGGATCTATT CTTTGAGAGT CTTGAAGGCA CTATTATTAA TTATTTAACA
  TTAATTTAAT ACATATCCTA ACAACTGTGG AGAGCATCTA AATGACCCAA GCCTCCAGGG
  CCCAATTTAC AGTCAGCCAC TTTTCCTCAG AGGCTAAGAC TTCTAGTTTC TCTCCGATTG
  Y
  GAGTAGCATT CTCTTATTAC ATGTATCCTC ATACAATTTT TAAAACAAGA CTTATTTTGT
  ACGTGTATGT GTCTGGGTGT GTGCTTCTGT GTGAATGGAT ACAGGGTGTG TGCAGGTCCT
  TCAGAGGCCA GAAGGGGGTG TTGGTTTGCC TGGAGTTGGA GTTACAAGCT CCGTGGGCCT
  CCTGAGAAGG AGGCTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009588	NES09388563	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829262					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009588	NES09388563	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59808447 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14351	CpG island 14351			1866 bp distal
Rr593144	regulatory region 593144			42 bp proximal
Rr593145	regulatory region 593145			124 bp proximal
Snx30	sorting nexin family member 30			Intron
				Noncoding-Transcript-Variant
Tssr37448	transcription start site region 37448			1608 bp downstream