rs27829259 SNP Detail

Summary

• ID
  rs27829259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59808812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTCCGT GGGCCTCCTG
  AGAAGGAGGC TGAACTCAGT TCCTCTGGAC GAGTAGGAAG TTCTTAAACT GCTGAGCCAT
  CTCTCCAACC CCTCCCAAAT ATTAGGAAAG AGATGCCAGC CAGCTGCAGA AATGAGGACA
  GTTTGGGGGG AGCTCCCTTG CCCACCCTCA CCTTGTTTAG GTATCATAAG TGCCCGTGGA
  R
  GGCAGGAGGT AGCATCAGGT GCTGTGTTCA GTCTTGTGAG AAGAGGCCTT TTTCCCTGCC
  TCTTTAGACA TTGGGGTTTC ATCCCAGACA AGGATTTAGG GTTGGCTCTG GGGGGGTGAG
  GGGCATGAAG GCGTTGGCAG GCTGGAGACA GTGTCAGGTT ATTGCCCAGA AGGGAGTTGC
  TTTCTCTGGC TTCAGATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38009585	NES09388476	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27829259					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009585	NES09388476	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59808812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593144	regulatory region 593144			113 bp distal
Rr593145	regulatory region 593145			220 bp distal
Snx30	sorting nexin family member 30			Intron
				Noncoding-Transcript-Variant
Tssr37448	transcription start site region 37448			1973 bp downstream