rs27829257 SNP Detail

Summary

• ID
  rs27829257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59809049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGAGG CCTTTTTCCC
  TGCCTCTTTA GACATTGGGG TTTCATCCCA GACAAGGATT TAGGGTTGGC TCTGGGGGGG
  TGAGGGGCAT GAAGGCGTTG GCAGGCTGGA GACAGTGTCA GGTTATTGCC CAGAAGGGAG
  TTGCTTTCTC TGGCTTCAGA TGGCGTTGCT AGCTAGCAGT GTAGCTGACA CTTCCGAATG
  K
  CCTTTTTTGT TCTGGGTGTA GGAAAGTGTG GTGGGTGCTC CATCCACCTC CTTCTCACAC
  TGTCCAAATC GCAGTGCAGT GGGAAGAATT CTTGTCTACT GAGGGCTGGA TGGGTGTGTC
  CTTCTGATGC TACCCAAACC CACCAGGCTA TGTATCCCTT CATTTTCCCC CTCCAGTTAA
  AATGTAAATA AAACCACTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009583	NES09388482	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829257					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009583	NES09388482	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59809049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593144	regulatory region 593144			350 bp distal
Rr593145	regulatory region 593145			457 bp distal
Snx30	sorting nexin family member 30			Intron
				Noncoding-Transcript-Variant