rs27829254 SNP Detail

Summary

• ID
  rs27829254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59809753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTGGCG TTTTTCCTGC
  ATGTATGTCT GTGTGAAGAT GTCAGATTCC CTGGAACTGG AGTTGCAAAC AGTTGTGAGC
  TGCCCATGTG GGTGCTGGGG ACTGAACCCA GGTCCTGTAG AAGAGCAGCC AGTGCTTTTA
  ACTGCTGAGC CATCTCTTCT AGCCTCCTAA ACCTTTAACT TTTAAACCCA GTGCTATACA
  R
  TGAATTCAAG ACTGAATAGC CAGGAGACCC TGTCTTAAAA CAAACCACCA CCACCAAAAC
  CCCAAGTAGT AATAATAATA ATAATAATAA TTCCATATTT AAATAAAACG TGCTAATATA
  GTGGATCACA GAGCCAGTTC TCAGCCGTCT GCGAGTGCAG TCTTGACTTC TTCCTGCTCA
  AGACCTTGTA CTGTCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38009580	NES09388433	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27829254					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009580	NES09388433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59809753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593144	regulatory region 593144			1054 bp distal
Rr593145	regulatory region 593145			1161 bp distal
Snx30	sorting nexin family member 30			Intron
				Noncoding-Transcript-Variant