rs27829141 SNP Detail

Summary

• ID
  rs27829141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59849656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTGTT ACTTTATTGT
  TGGTATATAC AATAATTTCC TTTTTTGTCA TTTTGGTAGC AGATTAGTGG TTAACCCTCA
  TAAAGTGACT TGGGAGGTTT TCCATGGTTC TATGTGTGCC TTGGAATACT TGACTAAGGC
  AGGCTTTGGG CTCCCTGGGG CTCAGCTGCA AACCTACTGG CCTAGGTGGT CGTTGTTTTC
  R
  GCCATGGGTC TGTCCTTTCT GTCACTGCCC AACTGTGGCT TTCTGGACTT AGAGTATAGT
  AACTTGTAAT ATACATATAA CTTGTAATCA TATAGAGAAA TAAGATCTAA ATAGTTATAT
  TTTTCTTTCT ATATTGGACA GGCCTTGTAA GTTTTACTAT GTCTAGTCCA TCTTCTAAAA
  TAATCAGAGT TTGTCCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009464	NES09421479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829141					SNP	G	G	G	G	A	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009464	NES09421479	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59849656 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	14 bp upstream
Rr593160	regulatory region 593160	368 bp proximal
Rr593161	regulatory region 593161	760 bp proximal
Rr593162	regulatory region 593162	1584 bp proximal
Snx30	sorting nexin family member 30	Intron