rs27829139 SNP Detail

Summary

• ID
  rs27829139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59849960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATG CTGTGGGCTA AAGCCATCTC
  S
  TGCATGTCTC TCGCTGCTGT GTGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38009460	NES09421483	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G		G	G	G		G	G	C		C
ss45650757	mCV24717424	ABI	CRAMUS_MOUSE	f	SNP		G	G					C
ss146403631	ENSMUSSNP4286922	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss321141560	CHEV_4_59862832	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829139					SNP	G	G	G	G	G	C	G	C	G	G	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009460	NES09421483	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59849960 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	within coordinates
Rr593160	regulatory region 593160	64 bp proximal
Rr593161	regulatory region 593161	456 bp proximal
Rr593162	regulatory region 593162	1280 bp proximal
Snx30	sorting nexin family member 30	Intron