rs27829129 SNP Detail

Summary

• ID
  rs27829129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59852857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTCCAG CCAATTCATA
  GCTTTGGATG TGATCTCTTG CCAGAGCTGC CATGTTGTTG GATTAAAATT CTTCTGCGCT
  CCCATATACT GACCCCCTCA GTGCTGCTGT ACCCTTATTG CAAATAGGAG AGCTTAAGGT
  ACAGTGTCCC TGCTAGTGGA GGCAAGCTTT TAACATGGCC AGTGTGGCTC AGGTTACCCT
  Y
  GGAGGTATTC TCAGTTCCCA GGTGTCTATC TGGTACCTTC TGTTGTTCTA AGACTCATTC
  ATCTCTACTT TTCGAGTCCC CCCCCCCCCC CCCAGTACAG CATAGTCTCT GCTTTCATGG
  AATTCACAGA TGAGTAGAGA GTCAGACAGT CAAATCAGTG AATATGCAAT AAAGTTCAAA
  TAATGATAAT CCTGTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009448	NES09421323	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829129					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009448	NES09421323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59852857 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	1684 bp downstream
Rr593162	regulatory region 593162	1207 bp distal
Snx30	sorting nexin family member 30	Intron