rs27829127 SNP Detail

Summary

• ID
  rs27829127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59853440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACAGAGCG AGCGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAACATA
  TAGTACAAAG GTCTGAGGTA CAGTGAGCAG TGTCAGCCAG AAGGCCAGTG ATTGAGAGTA
  GGAGGAACTC AGGGAGAGAA GTAGTGTGTG GAGGAGGGGA GGGGGCGGGT CAGTAATGCC
  Y
  GCTCTATGGA AGTGAGTTTA GACTTGTGTA ATGGGATGGT TTTGAGAATT TAAAGCATGG
  AAGCGACATA TTTGGATTTA TATATTTTTA AAACCTTTTT TTAAAAAGCC ACGATCTCAT
  TATGTAGTAG TCTTGGCTGT CCTGGAGCTT GCTGTATTTA CTTATTTATT TTTGATTCTA
  TACCTATGTA TTGTGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38009446	NES09421300	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829127					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009446	NES09421300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59853440 () rs orientation: forward

Symbol	Name	Function Class
Rr593162	regulatory region 593162	1790 bp distal
Snx30	sorting nexin family member 30	Intron