rs27826402 SNP Detail

Summary

• ID
  rs27826402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45085860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGCACA TGCTGAGCAA
  GTGCTACCCC CCTGTACCCC CTGTACCCCC CTACATCCCA GCCTTCAACG ATTCATTTGT
  TTAAACCCCA AACAAAACAC CTAGACCCAA ACCCAACAAT TGAATGCTGA CCGAGAGCTG
  TTCAGCAAGC ACACAGATGT AGTGGAAAGG CCATGCTTAG ACGTCGCTTA CGTTTGGCAA
  R
  CCGATCGCAC GTCTAATCCT TTGAAAAGTG GCCCATTGTA TGAAACCAGC AGGCTGAATA
  TGAATTTCAA TACCCAATTA AAAGCCTGAG TTCCTGGATT TGTGCTATCA AACATTATTG
  TTTGTGTTGG CATTTCTCTA AAAAGGTTAG GACATTCAAA GGACAACAAT GGGGCCCGTC
  TAACACAGCA TGCTGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37999421	NES09453058	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826402					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999421	NES09453058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45085860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14228	CpG island 14228	860 bp distal
Fbxo10	F-box protein 10	1305 bp upstream
Rr591310	regulatory region 591310	1267 bp distal
Rr591311	regulatory region 591311	766 bp distal
Rr591312	regulatory region 591312	553 bp distal
Tssr41529	transcription start site region 41529	1257 bp upstream