rs27826399 SNP Detail

Summary

• ID
  rs27826399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45086365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTATG CGTAAGTGTG
  CTTTGGCTAC ATGCATGTCT GTGCACAAGA ACAGTATTTG TAAGCGACTG GTTGCTCCTC
  TCTTCTTACC CTCATCTGTC TGGCGCAGGC CTCCATCCCA CCATGTGTGT AATGCTCTTG
  TCTCTTGACT TCTCTACTTC ATTTGACTGG AGTGGGCTTG CTCACCTTAG CAGCCTGGCA
  Y
  GTCATTCGTA TTTATAGCAA ATGAACGAGG GCACATACAG TCTCCACGGC CATGTAGACT
  TTTGCTTTAT AGAGAGATTA GACTCAGGCA GAGTCATTTG GCCACAGGTA ACCCAACAGC
  TATCATCCTT TTCGGCTGCC TGCGGGTCTC AGCTCTCTTC CTACCTTACG GGGGGTCTTC
  AATGATGAGC TTGTTGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37999418	NES09453061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826399					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37999418	NES09453061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45086365 () rs orientation: forward

Symbol	Name	Function Class
Fbxo10	F-box protein 10	1810 bp upstream
Rr591310	regulatory region 591310	1772 bp distal
Rr591311	regulatory region 591311	1271 bp distal
Rr591312	regulatory region 591312	1058 bp distal
Tssr41529	transcription start site region 41529	1762 bp upstream