rs27826313 SNP Detail

Summary

• ID
  rs27826313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43981373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCACCAC ACCCCAATTT
  TTGTTTTGTT TTAAGGTCTA TGTTGCCCAG GCTGACCTTA AACTTTTGAG CTCAGAGTCC
  CTCCTGCTTC TGCCTGCCGA GTAATGGGAT TCTTTGAGTC TTGAGTTTGT TGAGGATGGG
  AGCTTTGCAA CTAAGACCTA AGACCGGAAA CTGTGGCAAA TGCTCTCCGG TTGAACAAGC
  Y
  TCTTCTCTCC AGGCCTTAGT CAGGTCTGTC AGATCCTCCC AGACCTCCAT GATCTCCAGC
  TGGAGGCATA CGGTGAGTGA GCTCATTTCT GTCCTGGTGC TCTGGGATCT GATGACCTTC
  TGCTTCCGGT AAATGTCCCA GGAAGTGGGG TCTGACAGTC AGGATGCCAC TGGATTCAGG
  CATCCTTATC AGACTCACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003632	NES09461217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27826313					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003632	NES09461217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43981373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14203	CpG island 14203	1073 bp proximal
Rr398234	regulatory region 398234	1120 bp upstream
Rr591124	regulatory region 591124	1984 bp distal
Rr591125	regulatory region 591125	1131 bp distal
Rr591126	regulatory region 591126	699 bp proximal
Rr591127	regulatory region 591127	1196 bp proximal